Financial Support: INFORMATICS TRAINING - BRAZILIAN VECTOR/PARASITIC DISEASE Link
Grant number: 1D43TW007012-01, FOGARTY INTERNATIONAL CENTER
Organization:
Guilherme Oliveira -Email
Program
Monday - 25
Morning
-Types of Sequencing Projects
-Overview on sequences treatment
-Essential commands and Linux notions
Afternoon
-Genomics Databases
-Base calling and quality file - Phred
Tuesday - 26
Morning
-Vetor mascarading and repetitive sequences- Crossmatch
-Clustering of sequences – Phrap
Afternoon
-Blast
Wednesday-27
Morning
-Pratics Exercises for sequences analisys
-Running local blast
Afternoon
-Consed
Thursday - 28
Morning
-Genome Projetcs
Afternoon
-Protein annotation
Friday -29
Morning
-Design of annotation Pipeline
Afternoon
-Protein Modelling
Confirmed Teachers:
Guilherme Oliveira CPqRR-FIOCRUZ Web
Arthur Gruber IME-USP Web
José Miguel Ortega ICB-UFMG Web
Paula Kuser EMBRAPA Web
Eduardo F Formighieri UNICAMP Web
Alessandra Campos ICB-UFMG Web
Monitors:
Adhermar Zerlotini -Email
Anderson Dominitini -Email
Rômulo Lúcio Vale de Morais -Email
Students:
1.Alysson dos Santos Silvano CPqRR, LIP -Email
2.Betânia Paiva Drumond UFMG, Dept. Microbiol -Email
3.Carlota Josefovicz Belisário CPqRR, LT -Email
4.Cláudio Márcio G. Frazão CEFET-Email
5.Daniel Barbosa Liarte CPqRR, LPCM-Email-
6.Fernanda Barbosa Nogueira CPqR, LPCM-Email
7.Fernanda Ludolf CPqRR, LPCM-Email
8.Fernanda M. Freire Campos CPqRR, LPCM -Email
9.Flávio Marcos Gomes Araújo CPqRR, LPCM -Email
10. Juciane Vez CPqRR, LPCM -Email
11.Liana Passos CPqRR, LH -Email
12.Luiz Henrique Rosa CPqRR, LQPN -Email
13.Mariana Simões CPqRR, LPCM -Email
14.Nilton Barnabé Rodrigues CPqRR, LPCM -Email
15.Rachel Basques Caligiorne CPqRR, LPC -Email
16.Roberta Lima Caldeira CPqRR. LH -Email
17.Sabrina Sidney Campolina Santa Casa BH -Email
18.Silvane Maria Fonseca Murta CPqRR, LPCM -Email
19.Solange Busek CPqRR, LICM -Email
20.Taís Nóbrega de Sousa CPqRR, LM -Email
Pictures: Here
Summary:
During the course "Introduction to Bioinformatics Tools", we will cover the
following themes: quality analysis of DNA sequences, identification of
vectors and repeats, clustering of sequences, visualization of clusters,
similarity search, identification of polymorphisms, ontogenies, design of
DNA sequence analysis pipeline, databases, genome and transcriptome projects
and protein modeling. Various useful tools for small and large scale
projects will be demonstrated. The course will the practical and
theoretical. The target public are graduate students, post-docs and
researchers with immediate interest in the use of bioinformatics tools.
Interesting Links:
Phred – Crossmatch – Phrap – Consed Here
NCBI Handbook Here
Guia sobre Linux Here
Tutorial sobre Blast Here
Livros online sobre biologia molecular Here
Documentação do Blast Here
Programs:
Leech ftp Here
Putty Here
Blast Here
Phred – Crossmatch – Phrap – Consed Here
Location:
Conference Room
Centro de Pesquisas René Rachou – FIOCRUZ, 25 a 29 de abril, 2005.
Av. Augusto de Lima 1715, Barro Preto, Belo Horizonte, MG, 30190-002, Brasil.
Fone: +55-31-3295-3566, FAX: +55-31-3295-3115. |
